Strains: Bacillus arsenicoselenatis E1H AF064705 Bacillus infernus TH-23 U20385 Bacillus selenitireducens MLS10 AF064704 Deferribacter desulfuricans SSM1 AB086060 Deferribacter thermophilus BMA U75602 Desulfacinum hydrothermale MT-96 AF170417 Desulfobacca acetoxidans ARSB2 AF002671 Desulfobacter halotolerans GSL-Ac1 Y14745 Desulfobacter vibrioformis B54 U12254 Desulfobacterium vacuolatum IbRM M34408 Desulfobacula phenolica PhO1 AJ237606 Desulfobacula toluolica Tol2 X70953 Desulfobulbus mediterraneus 86FS1 AF354663 Desulfocella halophila GSL-But2 AF022936 Desulfococcus multivorans 1be1 M34405 Desulfofaba fastidiosa P2 AY268891 Desulfofaba gelida PSv29 AF099063 Desulfofaba hansenii P1 AF321820 Desulfofrigus fragile LSv21 AF099065 Desulfofrigus oceanense ASv26 AF099064 Desulfofustis glycolicus PerGlyS X99707 Desulfomonile limimaris DCB-M AF230531 Desulfomonile tiedjei DCB-1 M26635 Desulfonatronum thiodismutans MLF1 AF373920 Desulfonema ishimotonii Tokyo 01 U45991 Desulfonema limicola 5ac10 U45990 Desulfonema magnum 4be13 U45989 Desulforegula conservatrix MbPa AF243334 Desulforhopalus vacuolatus ltk10 L42613 Desulfospira joergensenii B331 X99637 Desulfotalea arctica LSv514 AF099061 Desulfotalea psychrophila LSv54 AF099062 Desulfotignum balticum Sax AF233370 Desulfotignum phosphitoxidans FiPs-3 AF420289 Desulfotomaculum alkaliphilum S1 AF097024 Desulfotomaculum auripigmentum OREX-4 U85624 Desulfotomaculum halophilum SEBR 3139 U88891 Desulfovibrio capillatus MET2 AY176773 Desulfovibrio desulfuricans Essex 6 AF192153 Desulfovibrio fructosivorans AF050101 Desulfovibrio gabonensis SEBR 2840 U31080 Desulfovibrio halophilus SL 8903 X99237 Desulfovibrio intestinalis KMS2 Y12254 Desulfovibrio magneticus RS-1 D43944 Desulfovibrio oxyclinae PIB U33316 Desulfovibrio profundus 500-1 U90726 Desulfovibrio salexigens M34401 Desulfovibrio senezii CVL AF050100 Desulfovibrio termitidis KSS-1 Y12255 Desulfovibrio zosterae lac Y18049 Desulfovirga adipica TsuAS1 AJ237605 Desulfuromonas acetexigens 2873 U23140 Desulfuromonas palmitatis SDBY1 U28172 Desulfuromusa bakii Gyrop X79412 Desulfuromusa kysingii Kysw2 X79414 Desulfuromusa kysingii Kyval Desulfuromusa succinoxidans Gylac X79415 Ferribacterium limneticum CdA-1 Y17060 Ferrimonas balearica PAT X93021 Geobacter bremensis Dfr1 U96917 Geobacter chapellei 172 U41561 Geobacter grbiciae TACP-2 AF335182 Geobacter hydrogenophilus H2 U28173 Geobacter hydrogenophilus H4 U46860 Geobacter metallireducens GS-15 L07834 Geobacter pelophilus Dfr2 U96918 Geobacter sulfurreducens PCA U13928 Geovibrio ferrireducens PAL-1 X95744 Rhodoferax ferrireducens T118 AF435948 Sulfurospirillum barnesii SES-3 AF038843 Properties: ELECTRON ACCEPTORS 3-chlorobenzoate As(V) Co(III) Cr(VI) DMSO fumarate iron (III) forms: Fe(III) oxide Fe(III)-citrate Fe(III)-NTA Fe(III)-oxyhydroxide Fe(III)-pyrophosphate ferrihydrite iron chloride malate Mn(IV) nitrogen species: nitrate nitrite oxygen selenium species: Se(IV) Se(VI) sulfur species: sulfate sulfite sulfur thiosulfate trimethylamine oxide (TMAO) U(VI) ELECTRON DONOR / CARBON SUBSTRATES 2-methylbutyrate 3-methylbutyrate acetate acetone adipic acid alanine arabinose aspartate benzene benzoate butanol butyrate caprate caproate Casamino acids casein choline citrate crotonate cysteine ethanol formate formate+acetate fructose fumarate galactose glucose glutamate glutarate glycerol glycine glycolate glyoxylate hydrogen hydrogen + acetate hydroxybenzoate lactate malate maleate malonate mannitol mannose methanol oxalate oxaloacetate palmitate peptone phenol phenylacetate phosphite proline propanol propionate pyruvate serine starch succinate sucrose sulfide threonine toluene tryptone valerate xylose yeast extr FERMENTATION 1Fermentation aspartate betaine casamino acids citrate formate fructose fumarate glucose glutamate glycerol lactate malate maleate oxaloacetate pyruvate succinate sulfite thiosulfate LOCATION 16S accession number culture collection number sample site sampling date REFERENCES citation STRAIN name Open selection in: Transpose Matrix

181 Bacillus arsenicoselenatis E1H AF064705 81 Bacillus infernus TH-23 U20385 83 Bacillus selenitireducens MLS10 AF064704 171 Deferribacter desulfuricans SSM1 AB086060 85 Deferribacter thermophilus BMA U75602 17 Desulfacinum hydrothermale MT-96 AF170417 164 Desulfobacca acetoxidans ARSB2 AF002671 231 Desulfobacter halotolerans GSL-Ac1 Y14745 178 Desulfobacter vibrioformis B54 U12254 149 Desulfobacterium vacuolatum IbRM M34408 180 Desulfobacula phenolica PhO1 AJ237606 179 Desulfobacula toluolica Tol2 X70953 176 Desulfobulbus mediterraneus 86FS1 AF354663 130 Desulfocella halophila GSL-But2 AF022936 132 Desulfococcus multivorans 1be1 M34405 18 Desulfofaba fastidiosa P2 AY268891 157 Desulfofaba gelida PSv29 AF099063 3 Desulfofaba hansenii P1 AF321820 156 Desulfofrigus fragile LSv21 AF099065 155 Desulfofrigus oceanense ASv26 AF099064 232 Desulfofustis glycolicus PerGlyS X99707 235 Desulfomonile limimaris DCB-M AF230531 139 Desulfomonile tiedjei DCB-1 M26635 248 Desulfonatronum thiodismutans MLF1 AF373920 242 Desulfonema ishimotonii Tokyo 01 U45991 136 Desulfonema limicola 5ac10 U45990 138 Desulfonema magnum 4be13 U45989 162 Desulforegula conservatrix MbPa AF243334 243 Desulforhopalus vacuolatus ltk10 L42613 175 Desulfospira joergensenii B331 X99637 159 Desulfotalea arctica LSv514 AF099061 158 Desulfotalea psychrophila LSv54 AF099062 247 Desulfotignum balticum Sax AF233370 1 Desulfotignum phosphitoxidans FiPs-3 AF420289 19 Desulfotomaculum alkaliphilum S1 AF097024 87 Desulfotomaculum auripigmentum OREX-4 U85624 129 Desulfotomaculum halophilum SEBR 3139 U88891 190 Desulfovibrio capillatus MET2 AY176773 111 Desulfovibrio desulfuricans Essex 6 AF192153 5 Desulfovibrio fructosivorans AF050101 187 Desulfovibrio gabonensis SEBR 2840 U31080 2 Desulfovibrio halophilus SL 8903 X99237 249 Desulfovibrio intestinalis KMS2 Y12254 165 Desulfovibrio magneticus RS-1 D43944 12 Desulfovibrio oxyclinae PIB U33316 13 Desulfovibrio profundus 500-1 U90726 4 Desulfovibrio salexigens M34401 8 Desulfovibrio senezii CVL AF050100 116 Desulfovibrio termitidis KSS-1 Y12255 6 Desulfovibrio zosterae lac Y18049 161 Desulfovirga adipica TsuAS1 AJ237605 23 Desulfuromonas acetexigens 2873 U23140 7 Desulfuromonas palmitatis SDBY1 U28172 31 Desulfuromusa bakii Gyrop X79412 33 Desulfuromusa kysingii Kysw2 X79414 34 Desulfuromusa kysingii Kyval 30 Desulfuromusa succinoxidans Gylac X79415 35 Ferribacterium limneticum CdA-1 Y17060 36 Ferrimonas balearica PAT X93021 240 Geobacter bremensis Dfr1 U96917 69 Geobacter chapellei 172 U41561 39 Geobacter grbiciae TACP-2 AF335182 37 Geobacter hydrogenophilus H2 U28173 38 Geobacter hydrogenophilus H4 U46860 68 Geobacter metallireducens GS-15 L07834 241 Geobacter pelophilus Dfr2 U96918 41 Geobacter sulfurreducens PCA U13928 43 Geovibrio ferrireducens PAL-1 X95744 174 Rhodoferax ferrireducens T118 AF435948 28 Sulfurospirillum barnesii SES-3 AF038843

©2004 I. Ceraj, V. Klepac-Ceraj and M. Polz