| Clusterer | ||
|
Clusterer
ChimeraBuster
Linebreaker
PhysioMapper
ClustalW
Clusterer
Clusterer WS
ChimeraBuster
ChimeraBuster WS
Linebreaker
PhysioMapper
Nexus->Fasta conv
Nexus->Mega conv
Sequence conversion
|
Introduction
"Clusterer" is an application developed for building clusters of sequences. Clustering is performed to better quantify sequence variations in data set.
Rationale
Assumption of Clusterer is that sequences belonging to same cluster differ on small number of base pairs. Clusters are build of sequences that are closer to at least neighbour than predefined value.
The Algorithm Description
Program compares each two sequences in the library, and if they are closer than predefined distance places them in same bin. Bins are at the end of the process renamed to reflect their size.
Reporting
It reports in "Execution" frame, and "Done" frame.
I'm working on paragraph that will describe outputs.
"Done" output is fasta set. "Execution" output contains:
2004 Feb 11 - Removed JDK 1.4 specific API |
|